The Executive Committee is the one that leads the organization. It is the headed by the President of the Eswatini Football Association  (EFA), who is assisted by three (3) Vice Presidents. The other Members of the Executive Committee are the four (4) Chairmen of the Regional Football association, Chairman of the Women Football Association, the General Secretary (GS) of the EFA and two (2) other Members, who are Chairmen of the standing committees.

Within the EFA structure, the is a Secretariat, which is responsible for the day-to- day tasks of the EFA's office under the full guidance of the GS who is also the Chief Executive Officer (CEO) of the EFA. The full operations of the Secretariat is under the auspice of the Executive Committee of the EFA.